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IBS or celiac disease: how do you tell them apart?

Updated 2026-10-31 · 4 min read

Short answer

With a blood test. Celiac disease is an immune reaction to gluten that injures the small intestine and produces antibodies a simple blood test can detect; IBS has no such marker. Because the symptoms overlap, guidelines advise celiac testing for people with IBS symptoms. The test only works while you're still eating gluten, so get tested before you cut it out.

Key takeaways

Celiac disease and IBS can both cause bloating, belly pain and diarrhea, so they're easy to mistake for each other. Celiac disease is also more common in people with IBS-type symptoms: in a meta-analysis of 36 studies, the odds of biopsy-proven celiac disease were about 4.5 times higher in people with IBS symptoms than in healthy controls, although North American studies didn't show that excess.[1] Telling them apart matters, because celiac disease needs a strict, lifelong gluten-free diet and medical follow-up.[2]

What is the difference between IBS and celiac disease?

Celiac disease is a permanent immune reaction to gluten, the protein in wheat, barley and rye. It injures the small intestine and produces specific antibodies that show up on a blood test.[2] IBS is a disorder of gut–brain interaction. It's diagnosed from its pattern of symptoms, and the simple blood and stool tests used to rule out other conditions come back normal.[3]

IBSCeliac disease
What it isDisorder of gut–brain interaction[3]Permanent immune reaction to gluten[2]
Effect on the bodySimple blood and stool tests are normal[3]Injures the small intestine, seen on biopsy as flattened villi (villous atrophy); linked to osteoporosis and intestinal lymphoma[4]
How commonAbout 4% of people worldwide[5]About 1% (range 0.5–2%)[4]
Blood testNone confirms it[3]IgA tissue transglutaminase (tTG) antibodies, with total IgA[6]
Confirmed bySymptom criteria (Rome IV) plus a few normal tests[7][3]Small-intestine biopsy in most adults[2]
GlutenA gluten-free diet isn't recommended[3]Strict lifelong gluten-free diet[2]

IBS vs celiac symptoms: can you tell by how you feel?

Not reliably. Both can cause pain, bloating and a change in bowel habits. IBS is defined by recurrent belly pain, on average at least one day a week, that's linked to bowel movements or to changes in how often you go or what your stool looks like.[7] Celiac disease is more varied: it can cause classic gut symptoms, symptoms elsewhere in the body, or nothing obvious at all.[4]

UK guidelines list these, among others, as reasons to test for celiac disease:[6]

Why should you get tested before cutting out gluten?

Because the tests look for the antibodies and intestinal injury that gluten causes. NICE, the UK's guideline body, advises that any celiac test is accurate only while you're eating gluten, and that you shouldn't start a gluten-free diet until a specialist has confirmed the diagnosis — even after a positive blood test.[6]

IBS guidelines build this in. The British Society of Gastroenterology says everyone who first sees a doctor with IBS symptoms should have celiac blood tests, along with a blood count and an inflammation marker.[3] The American College of Gastroenterology suggests celiac testing for people with IBS and diarrhea.[8] For the rest of the workup, see how IBS is diagnosed.

Sliced whole-wheat loaf on a board
Wheat bread contains gluten and fructans, so feeling better without it doesn't show which one was the problem.Photo: Veganbaking.net, CC BY-SA 2.0, via Wikimedia Commons

IBS vs gluten intolerance: is it the gluten or the fructans?

"Gluten intolerance" usually means non-celiac gluten sensitivity: symptoms improve without gluten, but celiac disease has been ruled out. There's no biomarker for it.[9] When researchers have tested it blind, gluten itself rarely turns out to be the culprit:

Fructans are a FODMAP — one of the fermentable oligo-, di-, monosaccharides and polyols, short-chain carbohydrates that gut bacteria ferment. Wheat contains them, and British guidelines note that the benefit people report from a gluten-free diet may come mainly from eating fewer fructans.[3] Garlic, onions, shallots and leeks are among the richest sources too.[11] More in garlic, onion and fructans, and if you're weighing the two diets, see is low FODMAP gluten-free?

If your celiac tests are negative and wheat still seems to bother you, look at what else was in those meals. Symptoms that also follow onion- and garlic-heavy dishes point toward fructans rather than gluten. IBS Clue, an iPhone app, estimates the fructan level of each meal you log, including hidden onion and garlic, and ranks which FODMAP groups most likely trigger you — something you can then confirm with a reintroduction.

When to see a doctor

See a doctor for a celiac blood test before you change your diet, and promptly if you notice any of these warning signs:[12][3]

Whichever diet you end up trying, a dietitian can help you keep it nutritious. British guidelines advise checking for disordered eating before recommending restrictive diets, so tell your doctor if you have, or have had, an eating disorder.[3] Get advice first, too, if you're pregnant or changing a child's diet.

Frequently asked questions

Should people with IBS avoid gluten?

Not routinely. British guidelines don't recommend a gluten-free diet for IBS, partly because the benefit some people notice seems to come from eating fewer fructans in wheat rather than less gluten. If wheat bothers you, a dietitian-led low-FODMAP diet with reintroduction can show what the real trigger is.

Can I be tested for celiac disease if I've already gone gluten-free?

The tests aren't reliable while you avoid gluten. UK guidelines advise eating gluten in more than one meal a day for at least 6 weeks before testing. If you can't, see a specialist, who may consider genetic (HLA) testing instead.

Does a negative celiac blood test rule it out?

Usually, if you were eating gluten when you were tested and the lab also checked your total IgA level. If celiac disease is still suspected, UK guidelines advise referral to a specialist, and testing can be repeated if new symptoms appear.

Is celiac disease more serious than IBS?

It can be. Celiac disease injures the small intestine and is linked to complications such as osteoporosis and intestinal lymphoma, which is why it needs a strict gluten-free diet and lifelong follow-up. IBS, by contrast, is diagnosed when simple blood and stool tests come back normal.

Sources

  1. Irvine AJ, Chey WD, Ford AC. Screening for celiac disease in irritable bowel syndrome: an updated systematic review and meta-analysis. Am J Gastroenterol. 2017;112(1):65-76. doi.org/10.1038/ajg.2016.466
  2. Rubio-Tapia A, Hill ID, Semrad C, et al. American College of Gastroenterology guidelines update: diagnosis and management of celiac disease. Am J Gastroenterol. 2023;118(1):59-76. doi.org/10.14309/ajg.0000000000002075
  3. Vasant DH, Paine PA, Black CJ, et al. British Society of Gastroenterology guidelines on the management of irritable bowel syndrome. Gut. 2021;70(7):1214-1240. doi.org/10.1136/gutjnl-2021-324598
  4. Catassi C, Verdu EF, Bai JC, Lionetti E. Coeliac disease. Lancet. 2022;399(10344):2413-2426. doi.org/10.1016/S0140-6736(22)00794-2
  5. Sperber AD, Bangdiwala SI, Drossman DA, et al. Worldwide prevalence and burden of functional gastrointestinal disorders, results of Rome Foundation Global Study. Gastroenterology. 2021;160(1):99-114.e3. doi.org/10.1053/j.gastro.2020.04.014
  6. National Institute for Health and Care Excellence. Coeliac disease: recognition, assessment and management. NICE guideline NG20. September 2, 2015. www.nice.org.uk/guidance/ng20/chapter/Recommendations
  7. Lacy BE, Mearin F, Chang L, et al. Bowel disorders. Gastroenterology. 2016;150(6):1393-1407.e5. doi.org/10.1053/j.gastro.2016.02.031
  8. Lacy BE, Pimentel M, Brenner DM, et al. ACG clinical guideline: management of irritable bowel syndrome. Am J Gastroenterol. 2021;116(1):17-44. doi.org/10.14309/ajg.0000000000001036
  9. Skodje GI, Sarna VK, Minelle IH, et al. Fructan, rather than gluten, induces symptoms in patients with self-reported non-celiac gluten sensitivity. Gastroenterology. 2018;154(3):529-539.e2. doi.org/10.1053/j.gastro.2017.10.040
  10. Biesiekierski JR, Peters SL, Newnham ED, et al. No effects of gluten in patients with self-reported non-celiac gluten sensitivity after dietary reduction of fermentable, poorly absorbed, short-chain carbohydrates. Gastroenterology. 2013;145(2):320-328.e3. doi.org/10.1053/j.gastro.2013.04.051
  11. Muir JG, Shepherd SJ, Rosella O, Rose R, Barrett JS, Gibson PR. Fructan and free fructose content of common Australian vegetables and fruit. J Agric Food Chem. 2007;55(16):6619-6627. doi.org/10.1021/jf070623x
  12. Gwee KA, Gonlachanvit S, Ghoshal UC, et al. Second Asian consensus on irritable bowel syndrome. J Neurogastroenterol Motil. 2019;25(3):343-362. doi.org/10.5056/jnm19041

This page is for general information and isn’t medical advice. IBS shares symptoms with other conditions, so see a doctor for a diagnosis — and promptly for warning signs such as blood in your stool, unexplained weight loss or symptoms that wake you at night.